Me in Blue Ridge Parway, North Carolina, United States
Biography

Hi, I am Sadman Sadeed Omee.

I am a Ph.D. Candidate in the Department of Computer Science and Engineering at the University of South Carolina. I am advised by Dr. Jianjun Hu, and I work as a Graduate Research Assistant in the Machine Learning and Evolution Laboratory under his supervision. My field of research is solving materials informatics problems using Deep Learning techniques.

I am born and raised in Bangladesh. I have completed my B.S. in Computer Science and Engineering from Bangladesh University of Engineering and Technology in 2019. My aim is to become an effective and impactful Deep Learning Scientist.

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Education
 
 
 
 
 
UofSC logo

University of South Carolina

Ph.D.
Computer Science
August 2021 - Current
 
 
 
 
 
BUET logo

Bangladesh University of Engineering and Technology

B.S.
Computer Science and Engineering
February 2015 - April 2019
Experience
 
 
 
 
 
UofSC logo

Graduate Research Assistant

Machine Learning and Evoluation Laboratory
Department of Computer Science and Engineering
University of South Carolina
Columbia, South Carolina, United States
January 2022 - Current
  • Conducting research on deep learning techniques like graph neural networks (GNNs), transformers, and diffusion models to solve materials informatics problems, such as crystal structure prediction, materials property prediction, and generative models for materials.
  • Currently developing a diffusion model-based crystal structure prediction (CSP) model for conditional generation of both crystal lattice parameters and 3D atom coordinates from chemical compositions.
 
 
 
 
 
UofSC logo

Graduate Teaching Assistant

Course: General Applications Programming (CSCE 102)
Department of Computer Science and Engineering
University of South Carolina
Columbia, South Carolina, United States
August 2021 - December 2021, August 2023 - Current
  • Teaching HTML, CSS, and JavaScript to three lecture groups of total of 75 students, and a lab group of total 25 students.
 
 
 
 
 
UofSC logo

Summer Research Intern

Lawrence Livermore National Laboratory
Livermore, California, United States
May 2024 - August 2024
  • Collaborated on a project for developing a multimodal foundation model for molecules. Specifics of the work cannot be provided due to the lab's confidentiality policies (ongoing as a collaborator).
Research

My Research is foucused on Deep Learning in Materials Informatics.

As a Ph.D. candidate in Computer Science at the University of South Carolina, my research focuses on developing state-of-the-art (SOTA) deep learning models, particularly graph neural networks (GNNs), transformers, and diffusion models, to solve complex problems in materials informatics. I have applied these methods to complex challenges such as crystal structure prediction (CSP), materials property prediction, and generative modeling of materials. My work on crystal structure prediction is similar to the protein structure prediction problem given amino acid seuqence, recently solved by Deepmind's AlphaFold2.

My current research focuses on developing a diffusion-based CSP model for conditional generation of crystals (both crystal lattice parameters and 3D coordinates of atoms), given their chemical compositions (e.g., NaCl, SrTiO3, Cu4FeGe2S7). I am inspired by successful diffusion model-based approaches in similar problems, such as molecular and protein structure prediction.

Publications
Journal Papers
  • DeeperGATGNN logo

    Scalable Deeper Graph Neural Networks for High-Performance Materials Property Prediction

    Sadman Sadeed Omee, Steph-Yves Louis, Nihang Fu, Lai Wei, Sourin Dey, Rongzhi Dong, Qinyang Li, Jianjun Hu
    Patterns
    2022
  • Structure-Based Out-of-Distribution (OOD) Materials Property Prediction: A Benchmark Study

    Sadman Sadeed Omee, Nihang Fu, Rongzhi Dong, Ming Hu, Jianjun Hu
    npj Computational Materials
    2024
  • Crystal Structure Prediction Using Neural Network Potential and Age-Fitness Pareto Genetic Algorithm

    Sadman Sadeed Omee, Lai Wei, Ming Hu, Jianjun Hu
    Journal of Materials Informatics
    2024
  • MD-HIT: Machine Learning for Materials Property Prediction with Dataset Redundancy Control

    Qin Li, Nihang Fu, Sadman Sadeed Omee, Jianjun Hu
    npj Computational Materials
    2024
  • MaterialsAtlas.org: A Materials Informatics Web App Platform for Materials Discovery and Survey of State-of-the-Art

    Jianjun Hu, Stanislav Stefanov, Yuqi Song, Sadman Sadeed Omee, Steph-Yves Louis, Edirisuriya M. D. Siriwardane, Yong Zhao
    npj Computational Materials
    2022
  • Material Transformers: Deep Learning Language Models for Generative Materials Design

    Nihang Fu, Lai Wei, Yuqi Song, Qinyang Li, Rui Xin, Sadman Sadeed Omee, Rongzhi Dong, Edirisuriya M Dilanga Siriwardane, Jianjun Hu
    Machine Learning: Science and Technology
    2023
  • Accurate Prediction of Voltage of Battery Electrode Materials Using Attention Based Graph Neural Networks

    Steph-Yves Louis, Edirisuriya M. D. Siriwardane, Rajendra P. Joshi, Sadman Sadeed Omee, Neeraj Kumar, Jianjun Hu
    ACS Applied Materials & Interfaces
    2022
  • DeepXRD: A Deep Learning Model for Predicting XRD Spectrum from Materials Composition

    Rongzhi Dong, Yong Zhao, Yuqi Song, Nihang Fu, Sadman Sadeed Omee, Sourin Dey, Qinyang Li, Lai Wei, Jianjun Hu
    ACS Applied Materials & Interfaces
    2022
  • Materials Property Prediction with Uncertainity Estimation: A Benchmark Study

    Daniel Varivoda, Rongzhi Dong, Sadman Sadeed Omee, Jianjun Hu
    Applied Physics Reviews
    2023
  • Global Mapping of Structures and Properties of Crystal Materials

    Qinyang Li, Rongzhi Dong, Nihang Fu, Sadman Sadeed Omee, Lai Wei, Jianjun Hu
    Journal of Chemical Information and Modeling
    2023
  • Towards Quantitative Evaluation of Crystal Structure Prediction Performance

    Lai Wei, Qin Li, Sadman Sadeed Omee, Jianjun Hu
    Computational Materials Science
    2024
  • TCSP: A Template-Based Crystal Structure Prediction Algorithm for Materials Discovery

    Lai Wei, Nihang Fu, Edirisuriya M. D. Siriwardane, Wenhui Yang, Sadman Sadeed Omee, Rongzhi Dong, Rui Xin, Jianjun Hu
    Inorganic Chemistry
    2022
Book Chapters
  • Evolutionary Machine Learning in Science and Engineering

    Jianjun Hu, Yuqi Song, Sadman Sadeed Omee, Lai Wei, Rongzhi Dong, Siddharth Gianey
    Handbook of Evolutionary Machine Learning
    2023
Submitted Manuscripts
  • Physical Encoding Improves out-of-distribution (OOD) Performance in Deep Learning Materials Property Prediction

    Nihang Fu, Sadman Sadeed Omee, Jianjun Hu
    2023
  • Crystal Structure Prediction: a Benchmark and Modern Evaluation

    Lai Wei, Sadman Sadeed Omee, Rongzhi Dong, Nihang Fu, Yuqi Song, Edirisuriya Siriwardane, Meiling Xu, Chris Wolverton, Jianjun Hu
    2023
CV / Resume

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Blogs

I will try to write blogs on Machine Learning and Deep Learning concepts. I will also try to cover some important research papers in this field and some of my own papers.

Coming soon ... !

Contact